The Brain Gene Expression Analysis toolbox
This toolbox is a Matlab implementation of computational techniques for the quantitative analysis of digitized brain-wide gene-expression data from the Allen Atlas of the adult mouse brain (last updated: October 15 2013, cell-type-specific data added to the toolbox).
The techniques include:
- visualizations of voxelized data (at a spatial resolution of 200 microns);
- comparison of gene expression to classical neuroanatomy (defined by the Allen Reference Atlas);
- statistical study of co-expression networks of sets of genes;
- clustering of sets of genes and voxels.
The toolbox can be downloaded as a compressed archive (zip format) of the code, and is accompanied by documentation in PDF format in a separate file.
To start downloading the documentation, click on the appropriate link below:
